.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "auto_examples/other/star/plot_spot_lightcurve.py"
.. LINE NUMBERS ARE GIVEN BELOW.

.. only:: html

    .. note::
        :class: sphx-glr-download-link-note

        :ref:`Go to the end <sphx_glr_download_auto_examples_other_star_plot_spot_lightcurve.py>`
        to download the full example code.

.. rst-class:: sphx-glr-example-title

.. _sphx_glr_auto_examples_other_star_plot_spot_lightcurve.py:


Plot the lightcurve of a spotted star
=====================================

This example plots the lightcurve caused by a
spotted photosphere.

.. GENERATED FROM PYTHON SOURCE LINES 8-22

.. code-block:: Python

    from pathlib import Path
    from astropy import units as u
    import matplotlib.pyplot as plt
    import libpypsg

    from VSPEC import ObservationModel,PhaseAnalyzer

    try:
        CFG_PATH = Path(__file__).parent / 'spot_lightcurve.yaml'
    except NameError:
        CFG_PATH = 'spot_lightcurve.yaml'

    libpypsg.docker.set_url_and_run()





.. rst-class:: sphx-glr-script-out

 .. code-block:: none

    Saved settings to /home/runner/.libpypsg/settings.json
    Reloading settings...




.. GENERATED FROM PYTHON SOURCE LINES 23-27

Initialize the VSPEC run
------------------------

We read in the config file and run the model.

.. GENERATED FROM PYTHON SOURCE LINES 27-32

.. code-block:: Python


    model = ObservationModel.from_yaml(CFG_PATH)
    model.build_planet()
    model.build_spectra()





.. rst-class:: sphx-glr-script-out

 .. code-block:: none

    /opt/hostedtoolcache/Python/3.11.10/x64/lib/python3.11/site-packages/VSPEC/main.py:89: RuntimeWarning: Planet sampling is too low (4.00 d > 1.25 d)
      warnings.warn(msg, RuntimeWarning)
    Starting at phase 0.0 deg, observe for 40.0 d in 10 steps
    Phases = [  0. 144. 288.  72. 216.   0. 144. 288.  72. 216.   0.] deg

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    Generated 2 mature spots
    Creating interpolators:
    thermal
    thermal, combined
    thermal, combined, stellar
    thermal, combined, stellar, photon noise
    thermal, combined, stellar, photon noise, detector noise
    thermal, combined, stellar, photon noise, detector noise, telescope noise
    thermal, combined, stellar, photon noise, detector noise, telescope noise, background noise
    thermal, combined, stellar, photon noise, detector noise, telescope noise, background noise, transit
    Finished!

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    Loading Spectra:  94%|█████████▍| 16/17 [00:51<00:03,  3.21s/it]PHOENIX grid for 3900 not found. Downloading...



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.. GENERATED FROM PYTHON SOURCE LINES 33-38

Load in the data
----------------

We can use VSPEC to read in the synthetic
data we just created.

.. GENERATED FROM PYTHON SOURCE LINES 38-41

.. code-block:: Python


    data = PhaseAnalyzer(model.directories['all_model'])





.. rst-class:: sphx-glr-script-out

 .. code-block:: none

    /opt/hostedtoolcache/Python/3.11.10/x64/lib/python3.11/site-packages/VSPEC/analysis.py:116: RuntimeWarning: No Layer info, maybe globes or molecular signatures are off
      warnings.warn(




.. GENERATED FROM PYTHON SOURCE LINES 42-46

Get the lightcurve
------------------

We will look in a few different wavelengths.

.. GENERATED FROM PYTHON SOURCE LINES 46-59

.. code-block:: Python


    wl_pixels = [0,300,500,700]
    time = data.time.to(u.day)
    for i in wl_pixels:
        wl = data.wavelength[i]
        lc = data.lightcurve(
            source='star',
            pixel=i,
            normalize=0
        )
        plt.plot(time,lc,label=f'{wl:.1f}')
    plt.legend()
    plt.xlabel(f'time ({time.unit})')
    _=plt.ylabel('Flux (normalized)')


.. image-sg:: /auto_examples/other/star/images/sphx_glr_plot_spot_lightcurve_001.png
   :alt: plot spot lightcurve
   :srcset: /auto_examples/other/star/images/sphx_glr_plot_spot_lightcurve_001.png
   :class: sphx-glr-single-img






.. rst-class:: sphx-glr-timing

   **Total running time of the script:** (1 minutes 53.671 seconds)


.. _sphx_glr_download_auto_examples_other_star_plot_spot_lightcurve.py:

.. only:: html

  .. container:: sphx-glr-footer sphx-glr-footer-example

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download Jupyter notebook: plot_spot_lightcurve.ipynb <plot_spot_lightcurve.ipynb>`

    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download Python source code: plot_spot_lightcurve.py <plot_spot_lightcurve.py>`

    .. container:: sphx-glr-download sphx-glr-download-zip

      :download:`Download zipped: plot_spot_lightcurve.zip <plot_spot_lightcurve.zip>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_